PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00381g24002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 188aa    MW: 21278.8 Da    PI: 7.5093
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00381g24002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.47.9e-131557143
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                              ++i+n+ nr+v+fskRr g+ KKA+ L   C++++ + i s+t
  Peinf101Scf00381g24002.1 15 EKIKNEVNRYVSFSKRRSGLYKKASDLVKQCNVDIGITISSPT 57
                              579*********************************9999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.703757IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-12769IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-18881IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-8929IPR002100Transcription factor, MADS-box
PfamPF003195.0E-151666IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-82944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MAHKKTAGRQ KVPMEKIKNE VNRYVSFSKR RSGLYKKASD LVKQCNVDIG ITISSPTPGT  60
GNSFSFFHPT VEAVVDRFLN PNTGLSESTR LVATHARNKV NEVIKDLETR EKFASNQVYQ  120
FDQTKETGEI DWWQSIEQFN EDEAIKFKAW LCDVIERMNN RLELLETSTS SSSQAPNSEN  180
ADNTPGTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474013.11e-66PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM1DRA51e-51M1DRA5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000931174e-51(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-25AGAMOUS-like 61